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| {{:: | {{:: | ||
| ====== pLOT Plasmid Plotter Manual ====== | ====== pLOT Plasmid Plotter Manual ====== | ||
| + | Download the [[Downloads|current version]] of the pLOT installation file. | ||
| ===== Table of Contents ===== | ===== Table of Contents ===== | ||
| - [[Introduction|Introduction]] | - [[Introduction|Introduction]] | ||
| - [[Getting Started|Getting Started]] | - [[Getting Started|Getting Started]] | ||
| - | * [[download|Download the pLOT installation file]] | + | * [[Getting Started# |
| - | * [[Installing pLOT|Installing pLOT]] | + | * [[Getting Started#Installing pLOT|Installing pLOT]] |
| - | * [[Checking for updates|Checking for updates]] | + | * [[Getting Started#Checking for updates|Checking for updates]] |
| - | - [[Main window components and menu items|Main window components and menu items]] | + | - [[Main window components and menu items|Main window components]] |
| - | * [[Creating a new sequence|Creating a new sequence]] | + | * [[Main window components and menu items#Main Window Components|Main Window Components]] |
| - | * [[Opening an existing file|Opening an existing file]] | + | * [[Main window components and menu items#The Tools Docking Window|The Tools Docking Window]] |
| - | * [[Saving your sequence|Saving your sequence]] | + | * [[Main window components and menu items#The Feature Viewer Docking Window|The Feature Viewer Docking Window]] |
| - | * [[Annotating your sequence manually|Annotating your sequence manually]] | + | - [[Creating and Editing Projects|Creating and Editing Projects]] |
| + | * [[Creating and Editing Projects#Creating a new sequence|Creating a new sequence]] | ||
| + | * [[Creating and Editing Projects#Opening an existing file|Opening an existing file]] | ||
| + | * [[Creating and Editing Projects#Saving your sequence|Saving your sequence]] | ||
| + | * [[Creating and Editing Projects#Annotating your sequence manually|Annotating your sequence manually]] | ||
| + | * [[creating_and_editing_projects# | ||
| - [[Sequence Manipulations|Sequence Manipulations]] | - [[Sequence Manipulations|Sequence Manipulations]] | ||
| - | * [[Inserting sequences|Inserting sequences]] | + | * [[Sequence Manipulations# |
| - | * [[Deleting sequences|Deleting sequences]] | + | * [[Sequence Manipulations# |
| - | * [[Reverse/ | + | * [[Sequence Manipulations# |
| + | * [[Sequence Manipulations# | ||
| - [[Feature Annotations|Feature Annotations]] | - [[Feature Annotations|Feature Annotations]] | ||
| - | * [[Creating a new annotation|Creating a new annotation]] | + | * [[Feature Annotations# |
| - | * [[Editing | + | * [[Feature Annotations# |
| - | * [[Changing a feature’s sequence to case|Changing a feature’s sequence to case to uppercase or lowercase]] | + | * [[Feature Annotations# |
| + | * Setting a feature' | ||
| + | * Setting feature graphic drawing orders | ||
| + | * Setting a feature' | ||
| + | * Editing a feature' | ||
| + | * [[Feature Annotations# | ||
| - [[Annotation Library|Annotation Library]] | - [[Annotation Library|Annotation Library]] | ||
| - | * Adding features from an existing sequence to the library | + | * [[annotation_library# |
| - | * [[Adding individual annotations from a project to the library|Adding individual annotations from a project to the library]] | + | * [[Annotation Library#Adding individual annotations from a project to the library|Adding individual annotations from a project to the library]] |
| - | * [[Adding all Items from a project to the library|Adding all Items from a project to the library]] | + | * [[Annotation Library#Adding all Items from a project to the library|Adding all Items from a project to the library]] |
| - | * Managing your annotation library | + | * [[annotation_library# |
| - | * [[Editing annotation properties|Editing annotation properties]] | + | * [[Annotation Library#Editing annotation properties|Editing annotation properties]] |
| - | * [[Removing of duplicate entries|Removing of duplicate entries]] | + | * [[Annotation Library#Removing of duplicate entries|Removing of duplicate entries]] |
| - | * [[Using categories|Using categories]] | + | * [[Annotation Library#Using categories|Using categories]] |
| - | * [[Auto-annotation of a sequence|Auto-annotation of a sequence]] | + | * [[Annotation Library#Auto-annotation of a sequence|Auto-annotation of a sequence]] |
| - [[Restriction Analysis|Restriction Analysis]] | - [[Restriction Analysis|Restriction Analysis]] | ||
| - | * [[Selecting individual enzymes|Selecting individual enzymes]] | + | * [[Restriction Analysis#Selecting individual enzymes|Selecting individual enzymes]] |
| - | * [[Setting up multi-enzyme mixes|Setting up multi-enzyme mixes]] | + | * [[Restriction Analysis#Setting up multi-enzyme mixes|Setting up multi-enzyme mixes]] |
| - | * [[Adding new enzymes to the database|Adding new enzymes to the database]] (not yet implemented) | + | * [[Restriction Analysis#Adding new enzymes to the database|Adding new enzymes to the database]] (not yet implemented) |
| + | - [[Tools|Tools]] | ||
| + | * [[tools# | ||
| + | * [[Converting Uppercase to Exons Example|Example using NRF1]] | ||
| + | * [[tools#DNA Element Search|DNA Element Search]] | ||
| + | * [[tools# | ||
| + | * [[tools# | ||
| + | * [[tools# | ||
| - [[Virtual Gel Electrophoresis|Virtual Gel Electrophoresis]] | - [[Virtual Gel Electrophoresis|Virtual Gel Electrophoresis]] | ||
| - | * Opening the Virtual Gel Window | + | * [[virtual_gel_electrophoresis# |
| - | * Setting the minimum fragment size | + | * [[virtual_gel_electrophoresis# |
| - | * Show/Hide band sizes | + | * [[virtual_gel_electrophoresis# |
| - | * Identifying the band in your sequence | + | * [[virtual_gel_electrophoresis# |
| - | * Selecting ladders | + | * [[virtual_gel_electrophoresis# |
| - | * Adding or editing ladders | + | * [[virtual_gel_electrophoresis# |
| - | - [[start:Disclaimer|Disclaimer]] | + | - [[start#Disclaimer|Disclaimer]] |
| ===== Disclaimer ===== | ===== Disclaimer ===== | ||
| By using this program, you agree not to hold me responsible for any incidents of program crashes, inadvertent | By using this program, you agree not to hold me responsible for any incidents of program crashes, inadvertent | ||
| data loss, nuclear disasters or anything else that may happen as a result of use. | data loss, nuclear disasters or anything else that may happen as a result of use. | ||
start.1610724790.txt.gz · Last modified: 2021/01/15 15:33 by xxeytz
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